IL_7F5S_039

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

7F5S|1|L5|G|748, 7F5S|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F5S_039 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1651

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7F5S|1|L5|G|745
7F5S|1|L5|A|746
7F5S|1|L5|A|747
7F5S|1|L5|G|748
7F5S|1|L5|G|749
7F5S|1|L5|U|750
7F5S|1|L5|G|751
7F5S|1|L5|G|752
*
7F5S|1|L5|U|911
7F5S|1|L5|G|912
7F5S|1|L5|U|913
7F5S|1|L5|U|914
7F5S|1|L5|A|915
7F5S|1|L5|C|916
7F5S|1|L5|A|917
7F5S|1|L5|G|918
7F5S|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a