IL_7F5S_050

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GGAUC*G(JMH)GCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: JMH

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F5S_050 not in the Motif Atlas

Geometric match to IL_3BBM_001

Geometric discrepancy: 0.3624

The information below is about IL_3BBM_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80926.1

Basepair signature

cWW-cWW-tSH-tHS-L-cWW

Number of instances in this motif group

7

Unit IDs

7F5S|1|L5|G|1425
7F5S|1|L5|G|1426
7F5S|1|L5|A|1427
7F5S|1|L5|U|1428
7F5S|1|L5|C|1429
*
7F5S|1|L5|G|1455
7F5S|1|L5|JMH|1456
7F5S|1|L5|G|1457
7F5S|1|L5|C|1458
7F5S|1|L5|A|1459
7F5S|1|L5|C|1460

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain Lb

60S ribosomal protein L29