IL_7F5S_109

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

7F5S|1|L5|A|3663, 7F5S|1|L5|U|3679, 7F5S|1|L5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F5S_109 not in the Motif Atlas

Homologous match to IL_8C3A_088

Geometric discrepancy: 0.0801

The information below is about IL_8C3A_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7F5S|1|L5|C|3660
7F5S|1|L5|G|3661
7F5S|1|L5|A|3662
7F5S|1|L5|A|3663
7F5S|1|L5|G|3664
7F5S|1|L5|G|3665
*
7F5S|1|L5|U|3677
7F5S|1|L5|G|3678
7F5S|1|L5|U|3679
7F5S|1|L5|U|3680
7F5S|1|L5|G|3681
7F5S|1|L5|A|3682
7F5S|1|L5|C|3683
7F5S|1|L5|G|3684

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a