IL_7F5S_191

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F5S_191 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0948

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7F5S|1|L5|G|2358
7F5S|1|L5|U|2359
7F5S|1|L5|A|2360
7F5S|1|L5|G|2361
7F5S|1|L5|U|2362
7F5S|1|L5|A2M|2363
7F5S|1|L5|OMG|2364
*
7F5S|1|L5|C|3858
7F5S|1|L5|G|3859
7F5S|1|L5|A|3860
7F5S|1|L5|A|3861
7F5S|1|L5|A|3862
7F5S|1|L5|C|3863

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17