IL_7F5S_207

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

7F5S|1|L5|U|4634, 7F5S|1|L5|PSU|4636

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F5S_207 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.4432

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7F5S|1|L5|U|4632
7F5S|1|L5|G|4633
7F5S|1|L5|U|4634
7F5S|1|L5|A|4635
7F5S|1|L5|PSU|4636
7F5S|1|L5|OMG|4637
*
7F5S|1|L5|C|4662
7F5S|1|L5|G|4663
7F5S|1|L5|A|4664
7F5S|1|L5|A|4665
7F5S|1|L5|G|4666

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31