IL_7JQB_026

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCACU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQB_026 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.1137

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

7JQB|1|A|C|491
7JQB|1|A|C|492
7JQB|1|A|A|493
7JQB|1|A|C|494
7JQB|1|A|U|495
*
7JQB|1|A|A|508
7JQB|1|A|G|509

Current chains

Chain A

rRNA

Nearby chains

Chain K

uS4

Chain M

40S ribosomal protein S4

Chain Z

40S ribosomal protein S24