IL_7JQB_035

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7JQB|1|A|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQB_035 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1359

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

7JQB|1|A|G|665
7JQB|1|A|U|666
7JQB|1|A|U|667
7JQB|1|A|A|668
7JQB|1|A|A|669
7JQB|1|A|A|670
7JQB|1|A|A|671
*
7JQB|1|A|U|1161
7JQB|1|A|C|1162

Current chains

Chain A

rRNA

Nearby chains

Chain D

uS5

Chain b

40S ribosomal protein S26

Chain c

Uncharacterized protein