IL_7JQB_038

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAGCG*CGUCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQB_038 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.3698

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7JQB|1|A|G|692
7JQB|1|A|A|693
7JQB|1|A|G|694
7JQB|1|A|C|695
7JQB|1|A|G|696
*
7JQB|1|A|C|730
7JQB|1|A|G|731
7JQB|1|A|U|732
7JQB|1|A|C|733
7JQB|1|A|C|734

Current chains

Chain A

rRNA

Nearby chains

Chain I

eS7

Chain Y

uS8