IL_7JQB_050

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

7JQB|1|A|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQB_050 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1303

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7JQB|1|A|G|952
7JQB|1|A|C|953
7JQB|1|A|U|954
7JQB|1|A|A|955
7JQB|1|A|G|956
*
7JQB|1|A|C|967
7JQB|1|A|U|968
7JQB|1|A|U|969
7JQB|1|A|G|970
7JQB|1|A|G|971
7JQB|1|A|A|972
7JQB|1|A|C|973
7JQB|1|A|C|974

Current chains

Chain A

rRNA

Nearby chains

Chain C

eS1

Chain X

Uncharacterized protein