IL_7JQB_063

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGCC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQB_063 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.1914

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7JQB|1|A|G|1269
7JQB|1|A|G|1270
7JQB|1|A|C|1271
7JQB|1|A|C|1272
*
7JQB|1|A|G|1510
7JQB|1|A|U|1511
7JQB|1|A|C|1512
7JQB|1|A|C|1513

Current chains

Chain A

rRNA

Nearby chains

Chain L

S10_plectin domain-containing protein

Chain Q

uS19

Chain g

eS31