IL_7JQB_074

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

7JQB|1|A|C|1403, 7JQB|1|A|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQB_074 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.2142

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

7JQB|1|A|A|1402
7JQB|1|A|C|1403
7JQB|1|A|U|1404
7JQB|1|A|A|1405
*
7JQB|1|A|U|1441
7JQB|1|A|U|1442
7JQB|1|A|C|1443
7JQB|1|A|U|1444

Current chains

Chain A

rRNA

Nearby chains

Chain R

Uncharacterized protein

Chain V

uS10