IL_7JQB_075

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCGA*UCGGC

Length

9 nucleotides

Bulged bases

7JQB|1|A|G|1428

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQB_075 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2411

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7JQB|1|A|G|1411
7JQB|1|A|C|1412
7JQB|1|A|G|1413
7JQB|1|A|A|1414
*
7JQB|1|A|U|1426
7JQB|1|A|C|1427
7JQB|1|A|G|1428
7JQB|1|A|G|1429
7JQB|1|A|C|1430

Current chains

Chain A

rRNA

Nearby chains

Chain R

Uncharacterized protein

Chain U

Uncharacterized protein