IL_7JQB_085

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQB_085 not in the Motif Atlas

Homologous match to IL_4V88_468

Geometric discrepancy: 0.3029

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7JQB|1|A|C|1717
7JQB|1|A|G|1718
7JQB|1|A|A|1719
7JQB|1|A|U|1720
*
7JQB|1|A|A|1813
7JQB|1|A|G|1814
7JQB|1|A|A|1815
7JQB|1|A|G|1816

Current chains

Chain A

rRNA

Nearby chains

Chain c

Uncharacterized protein