IL_7JQB_090

3D structure

PDB id

7JQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQB_090 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.1823

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7JQB|1|A|C|1742
7JQB|1|A|G|1743
7JQB|1|A|G|1744
7JQB|1|A|A|1745
7JQB|1|A|U|1746
*
7JQB|1|A|A|1788
7JQB|1|A|G|1789
7JQB|1|A|A|1790
7JQB|1|A|A|1791
7JQB|1|A|G|1792

Current chains

Chain A

rRNA

Nearby chains

Chain H

eS6

Chain J

eS8