IL_7JQC_016
3D structure
- PDB id
- 7JQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAUU*ACCUCGGG
- Length
- 12 nucleotides
- Bulged bases
- 7JQC|1|A|U|305, 7JQC|1|A|G|307
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7JQC_016 not in the Motif Atlas
- Geometric match to IL_1GID_008
- Geometric discrepancy: 0.3685
- The information below is about IL_1GID_008
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 36
Unit IDs
7JQC|1|A|C|216
7JQC|1|A|A|217
7JQC|1|A|U|218
7JQC|1|A|U|219
*
7JQC|1|A|A|302
7JQC|1|A|C|303
7JQC|1|A|C|304
7JQC|1|A|U|305
7JQC|1|A|C|306
7JQC|1|A|G|307
7JQC|1|A|G|308
7JQC|1|A|G|309
Current chains
- Chain A
- rRNA
Nearby chains
- Chain J
- eS8
- Chain M
- 40S ribosomal protein S4
Coloring options: