IL_7JQC_020
3D structure
- PDB id
- 7JQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 7JQC|1|A|U|361, 7JQC|1|A|C|399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7JQC_020 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.1366
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
7JQC|1|A|U|359
7JQC|1|A|A|360
7JQC|1|A|U|361
7JQC|1|A|C|362
7JQC|1|A|A|363
7JQC|1|A|A|364
*
7JQC|1|A|U|396
7JQC|1|A|G|397
7JQC|1|A|A|398
7JQC|1|A|C|399
7JQC|1|A|C|400
7JQC|1|A|A|401
7JQC|1|A|C|402
7JQC|1|A|G|403
Current chains
- Chain A
- rRNA
Nearby chains
- Chain J
- eS8
- Chain O
- uS17
- Chain c
- Uncharacterized protein
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