IL_7JQC_033
3D structure
- PDB id
- 7JQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 7JQC|1|A|A|628, 7JQC|1|A|U|630, 7JQC|1|A|U|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7JQC_033 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1224
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7JQC|1|A|G|611
7JQC|1|A|U|612
7JQC|1|A|G|613
7JQC|1|A|C|614
7JQC|1|A|C|615
7JQC|1|A|A|616
7JQC|1|A|G|617
*
7JQC|1|A|C|624
7JQC|1|A|G|625
7JQC|1|A|G|626
7JQC|1|A|U|627
7JQC|1|A|A|628
7JQC|1|A|A|629
7JQC|1|A|U|630
7JQC|1|A|U|631
7JQC|1|A|C|632
Current chains
- Chain A
- rRNA
Nearby chains
- Chain E
- Ribosomal protein S3
- Chain F
- Nsp1
- Chain c
- Uncharacterized protein
- Chain f
- eS30
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