IL_7JQC_035

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7JQC|1|A|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQC_035 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1752

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

7JQC|1|A|G|665
7JQC|1|A|U|666
7JQC|1|A|U|667
7JQC|1|A|A|668
7JQC|1|A|A|669
7JQC|1|A|A|670
7JQC|1|A|A|671
*
7JQC|1|A|U|1161
7JQC|1|A|C|1162

Current chains

Chain A

rRNA

Nearby chains

Chain b

40S ribosomal protein S26

Chain c

Uncharacterized protein