IL_7JQC_047

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQC_047 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.1605

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7JQC|1|A|G|942
7JQC|1|A|U|943
7JQC|1|A|A|944
7JQC|1|A|U|945
*
7JQC|1|A|A|981
7JQC|1|A|G|982
7JQC|1|A|A|983
7JQC|1|A|C|984

Current chains

Chain A

rRNA

Nearby chains

Chain C

eS1

Chain X

Uncharacterized protein