IL_7JQC_069
3D structure
- PDB id
- 7JQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 7JQC|1|A|C|1553, 7JQC|1|A|A|1580
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7JQC_069 not in the Motif Atlas
- Geometric match to IL_5J7L_055
- Geometric discrepancy: 0.2013
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7JQC|1|A|G|1550
7JQC|1|A|U|1551
7JQC|1|A|G|1552
7JQC|1|A|C|1553
7JQC|1|A|C|1554
7JQC|1|A|U|1555
7JQC|1|A|A|1556
7JQC|1|A|C|1557
7JQC|1|A|C|1558
*
7JQC|1|A|G|1577
7JQC|1|A|U|1578
7JQC|1|A|A|1579
7JQC|1|A|A|1580
7JQC|1|A|C|1581
7JQC|1|A|C|1582
Current chains
- Chain A
- rRNA
Nearby chains
- Chain E
- Ribosomal protein S3
- Chain L
- S10_plectin domain-containing protein
- Chain V
- uS10
Coloring options: