IL_7JSS_068

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7JSS|1|1|A|1801, 7JSS|1|1|C|1816, 7JSS|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSS_068 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0988

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7JSS|1|1|U|1798
7JSS|1|1|G|1799
7JSS|1|1|C|1800
7JSS|1|1|A|1801
7JSS|1|1|A|1802
7JSS|1|1|A|1803
7JSS|1|1|C|1804
*
7JSS|1|1|G|1813
7JSS|1|1|G|1814
7JSS|1|1|A|1815
7JSS|1|1|C|1816
7JSS|1|1|G|1817
7JSS|1|1|U|1818
7JSS|1|1|A|1819
7JSS|1|1|U|1820
7JSS|1|1|A|1821

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2