3D structure

PDB id
7JSS (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
7JSS|1|3|A|532, 7JSS|1|3|U|534
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JSS_136 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.2046
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

7JSS|1|3|G|515
7JSS|1|3|U|516
7JSS|1|3|G|517
7JSS|1|3|C|518
7JSS|1|3|C|519
7JSS|1|3|A|520
7JSS|1|3|G|521
*
7JSS|1|3|C|528
7JSS|1|3|G|529
7JSS|1|3|G|530
7JSS|1|3|U|531
7JSS|1|3|A|532
7JSS|1|3|A|533
7JSS|1|3|U|534
7JSS|1|3|A|535
7JSS|1|3|C|536

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain 8
Peptidyl-tRNA hydrolase ArfB
Chain H
30S ribosomal protein S3
Chain I
30S ribosomal protein S4
Chain Q
30S ribosomal protein S12

Coloring options:


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