IL_7JSW_016

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7JSW|1|1|G|801, 7JSW|1|1|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSW_016 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1471

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7JSW|1|1|G|674
7JSW|1|1|A|675
7JSW|1|1|A|676
7JSW|1|1|A|677
7JSW|1|1|C|678
*
7JSW|1|1|G|799
7JSW|1|1|A|800
7JSW|1|1|G|801
7JSW|1|1|A|802
7JSW|1|1|U|803
7JSW|1|1|A|804
7JSW|1|1|G|805
7JSW|1|1|C|806

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain l

50S ribosomal protein L15