3D structure

PDB id
7JSW (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGGGUAG*CGAAUAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JSW_026 not in the Motif Atlas
Homologous match to IL_5J7L_270
Geometric discrepancy: 0.1612
The information below is about IL_5J7L_270
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

7JSW|1|1|G|856
7JSW|1|1|G|857
7JSW|1|1|G|858
7JSW|1|1|G|859
7JSW|1|1|U|860
7JSW|1|1|A|861
7JSW|1|1|G|862
*
7JSW|1|1|C|915
7JSW|1|1|G|916
7JSW|1|1|A|917
7JSW|1|1|A|918
7JSW|1|1|U|919
7JSW|1|1|A|920
7JSW|1|1|C|921

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 2
5S ribosomal RNA; 5S rRNA
Chain m
50S ribosomal protein L16
Chain w
50S ribosomal protein L27
Chain z
50S ribosomal protein L30

Coloring options:


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