IL_7JSW_031

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGGG*CUUACC

Length

11 nucleotides

Bulged bases

7JSW|1|1|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JSW_031 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.3993

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

7JSW|1|1|G|879
7JSW|1|1|G|880
7JSW|1|1|G|881
7JSW|1|1|G|882
7JSW|1|1|G|883
*
7JSW|1|1|C|893
7JSW|1|1|U|894
7JSW|1|1|U|895
7JSW|1|1|A|896
7JSW|1|1|C|897
7JSW|1|1|C|898

Current chains

Chain 1

23S ribosomal RNA

Nearby chains