3D structure

PDB id
7JSW (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGGAG*UC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JSW_145 not in the Motif Atlas
Homologous match to IL_4LFB_032
Geometric discrepancy: 0.1555
The information below is about IL_4LFB_032
Detailed Annotation
Left turn
Broad Annotation
Left turn
Motif group
IL_29346.2
Basepair signature
cWW-L-cWW-L-L
Number of instances in this motif group
3

Unit IDs

7JSW|1|3|G|774
7JSW|1|3|G|775
7JSW|1|3|G|776
7JSW|1|3|A|777
7JSW|1|3|G|778
*
7JSW|1|3|U|804
7JSW|1|3|C|805

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain P
30S ribosomal protein S11
Chain Z
30S ribosomal protein S21
Chain b
50S ribosomal protein L2

Coloring options:


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