IL_7JT3_026

3D structure

PDB id

7JT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGGUAG*CGAAUAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JT3_026 not in the Motif Atlas

Geometric match to IL_5J7L_270

Geometric discrepancy: 0.124

The information below is about IL_5J7L_270

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7JT3|1|1|G|856
7JT3|1|1|G|857
7JT3|1|1|G|858
7JT3|1|1|G|859
7JT3|1|1|U|860
7JT3|1|1|A|861
7JT3|1|1|G|862
*
7JT3|1|1|C|915
7JT3|1|1|G|916
7JT3|1|1|A|917
7JT3|1|1|A|918
7JT3|1|1|U|919
7JT3|1|1|A|920
7JT3|1|1|C|921

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

5S ribosomal RNA; 5S rRNA

Chain m

50S ribosomal protein L16

Chain w

50S ribosomal protein L27

Chain z

50S ribosomal protein L30