3D structure

PDB id
7JT3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CUAAG*CGAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JT3_049 not in the Motif Atlas
Homologous match to IL_5J7L_292
Geometric discrepancy: 0.1522
The information below is about IL_5J7L_292
Detailed Annotation
UAA/GAN
Broad Annotation
UAA/GAN
Motif group
IL_89021.2
Basepair signature
cWW-L-R-L-R-tHS-cWW
Number of instances in this motif group
6

Unit IDs

7JT3|1|1|C|1351
7JT3|1|1|U|1352
7JT3|1|1|A|1353
7JT3|1|1|A|1354
7JT3|1|1|G|1355
*
7JT3|1|1|C|1376
7JT3|1|1|G|1377
7JT3|1|1|A|1378
7JT3|1|1|U|1379
7JT3|1|1|G|1380

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L34
Chain b
50S ribosomal protein L2

Coloring options:


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