IL_7JT3_054

3D structure

PDB id

7JT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

7JT3|1|1|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JT3_054 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.1036

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7JT3|1|1|C|1437
7JT3|1|1|U|1438
7JT3|1|1|A|1439
7JT3|1|1|U|1440
*
7JT3|1|1|A|1551
7JT3|1|1|A|1552
7JT3|1|1|A|1553
7JT3|1|1|U|1554
7JT3|1|1|G|1555

Current chains

Chain 1

23S ribosomal RNA

Nearby chains