3D structure

PDB id
7JT3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GAUAAG*CGAAAC
Length
12 nucleotides
Bulged bases
7JT3|1|1|A|2765
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JT3_102 not in the Motif Atlas
Homologous match to IL_5J7L_350
Geometric discrepancy: 0.0989
The information below is about IL_5J7L_350
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.8
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
6

Unit IDs

7JT3|1|1|G|2737
7JT3|1|1|A|2738
7JT3|1|1|U|2739
7JT3|1|1|A|2740
7JT3|1|1|A|2741
7JT3|1|1|G|2742
*
7JT3|1|1|C|2762
7JT3|1|1|G|2763
7JT3|1|1|A|2764
7JT3|1|1|A|2765
7JT3|1|1|A|2766
7JT3|1|1|C|2767

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain F
50S ribosomal protein L36
Chain f
50S ribosomal protein L6
Chain j
50S ribosomal protein L13

Coloring options:


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