3D structure

PDB id
7JT3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GGAUAAC*GCUAAUAC
Length
15 nucleotides
Bulged bases
7JT3|1|3|U|173
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JT3_123 not in the Motif Atlas
Homologous match to IL_5J7L_012
Geometric discrepancy: 0.1759
The information below is about IL_5J7L_012
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_80604.6
Basepair signature
cWW-cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
3

Unit IDs

7JT3|1|3|G|147
7JT3|1|3|G|148
7JT3|1|3|A|149
7JT3|1|3|U|150
7JT3|1|3|A|151
7JT3|1|3|A|152
7JT3|1|3|C|153
*
7JT3|1|3|G|168
7JT3|1|3|C|169
7JT3|1|3|U|170
7JT3|1|3|A|171
7JT3|1|3|A|172
7JT3|1|3|U|173
7JT3|1|3|A|174
7JT3|1|3|C|175

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain Y
30S ribosomal protein S20

Coloring options:


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