IL_7JT3_139
3D structure
- PDB id
- 7JT3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UAAG*CUG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7JT3_139 not in the Motif Atlas
- Geometric match to IL_4V9F_003
- Geometric discrepancy: 0.3024
- The information below is about IL_4V9F_003
- Detailed Annotation
- Major groove platform with extra cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_36931.1
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 23
Unit IDs
7JT3|1|3|U|594
7JT3|1|3|A|595
7JT3|1|3|A|596
7JT3|1|3|G|597
*
7JT3|1|3|C|643
7JT3|1|3|U|644
7JT3|1|3|G|645
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain M
- 30S ribosomal protein S8
- Chain V
- 30S ribosomal protein S17
Coloring options: