IL_7JT3_150

3D structure

PDB id

7JT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGGG*CUUG

Length

9 nucleotides

Bulged bases

7JT3|1|3|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JT3_150 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.19

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7JT3|1|3|C|924
7JT3|1|3|G|925
7JT3|1|3|G|926
7JT3|1|3|G|927
7JT3|1|3|G|928
*
7JT3|1|3|C|1389
7JT3|1|3|U|1390
7JT3|1|3|U|1391
7JT3|1|3|G|1392

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain 4

mRNA

Chain J

30S ribosomal protein S5