3D structure

PDB id
7JT3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GCCC*GUAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7JT3_169 not in the Motif Atlas
Homologous match to IL_5J7L_059
Geometric discrepancy: 0.4214
The information below is about IL_5J7L_059
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65718.4
Basepair signature
cWW-cSH-cWS-cWW-cWW
Number of instances in this motif group
4

Unit IDs

7JT3|1|3|G|1401
7JT3|1|3|C|1402
7JT3|1|3|C|1403
7JT3|1|3|C|1404
*
7JT3|1|3|G|1497
7JT3|1|3|U|1498
7JT3|1|3|A|1499
7JT3|1|3|A|1500
7JT3|1|3|C|1501

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain 4
mRNA
Chain 8
Peptidyl-tRNA hydrolase ArfB
Chain J
30S ribosomal protein S5
Chain Q
30S ribosomal protein S12

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