IL_7JU1_009

3D structure

PDB id

7JU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The FARFAR-NMR Ensemble of 29-mer HIV-1 Trans-activation Response Element RNA (N=20)

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AUCUG*CU

Length

7 nucleotides

Bulged bases

7JU1|7|X|U|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JU1_009 not in the Motif Atlas

Geometric match to IL_3IWN_005

Geometric discrepancy: 0.2349

The information below is about IL_3IWN_005

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

7JU1|7|X|A|22
7JU1|7|X|U|23
7JU1|7|X|C|24
7JU1|7|X|U|25
7JU1|7|X|G|26
*
7JU1|7|X|C|39
7JU1|7|X|U|40

Current chains

Chain X

RNA (29-MER)

Nearby chains