IL_7K52_082

3D structure

PDB id

7K52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCCU*AUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K52_082 not in the Motif Atlas

Geometric match to IL_5C5W_001

Geometric discrepancy: 0.2589

The information below is about IL_5C5W_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

7K52|1|1|G|2102
7K52|1|1|C|2103
7K52|1|1|C|2104
7K52|1|1|U|2105
*
7K52|1|1|A|2184
7K52|1|1|U|2185
7K52|1|1|G|2186
7K52|1|1|U|2187

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L1