IL_7K54_080

3D structure

PDB id

7K54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K54_080 not in the Motif Atlas

Geometric match to IL_5C5W_001

Geometric discrepancy: 0.1135

The information below is about IL_5C5W_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

7K54|1|1|C|2084
7K54|1|1|U|2085
7K54|1|1|U|2086
7K54|1|1|G|2087
*
7K54|1|1|C|2232
7K54|1|1|U|2233
7K54|1|1|G|2234
7K54|1|1|G|2235

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain b

50S ribosomal protein L2

Chain x

50S ribosomal protein L28