IL_7K5I_061

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

7K5I|1|2|C|1215, 7K5I|1|2|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7K5I_061 not in the Motif Atlas

Homologous match to IL_4V88_443

Geometric discrepancy: 0.0999

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

7K5I|1|2|A|1214
7K5I|1|2|C|1215
7K5I|1|2|C|1216
7K5I|1|2|A|1217
*
7K5I|1|2|U|1681
7K5I|1|2|C|1682
7K5I|1|2|C|1683
7K5I|1|2|C|1684
7K5I|1|2|U|1685

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16

Chain c

40S ribosomal protein S28