IL_7K5I_095
3D structure
- PDB id
- 7K5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-COV-2 nsp1 in complex with human 40S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 7K5I|1|2|C|1331, 7K5I|1|2|U|1494, 7K5I|1|2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7K5I_095 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1142
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7K5I|1|2|U|1329
7K5I|1|2|G|1330
7K5I|1|2|C|1331
7K5I|1|2|A|1332
7K5I|1|2|U|1333
7K5I|1|2|G|1334
7K5I|1|2|G|1335
*
7K5I|1|2|U|1492
7K5I|1|2|C|1493
7K5I|1|2|U|1494
7K5I|1|2|G|1495
7K5I|1|2|U|1496
7K5I|1|2|G|1497
7K5I|1|2|A|1498
7K5I|1|2|U|1499
7K5I|1|2|G|1500
Current chains
- Chain 2
- 40S ribosomal rRNA18S
Nearby chains
- Chain D
- 40S ribosomal protein S3
- Chain K
- 40S ribosomal protein S10
- Chain U
- 40S ribosomal protein S20
- Chain d
- 40S ribosomal protein S29
- Chain f
- 40S ribosomal protein S27a
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