IL_7KGB_041

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

7KGB|1|A|C|1271, 7KGB|1|A|A|1273

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7KGB_041 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.0899

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

7KGB|1|A|C|1147
7KGB|1|A|U|1148
7KGB|1|A|A|1149
7KGB|1|A|A|1150
7KGB|1|A|G|1151
7KGB|1|A|U|1152
7KGB|1|A|G|1153
*
7KGB|1|A|C|1269
7KGB|1|A|U|1270
7KGB|1|A|C|1271
7KGB|1|A|A|1272
7KGB|1|A|A|1273
7KGB|1|A|G|1274

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13