IL_7KGB_173

3D structure

PDB id

7KGB (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCUG*CGAAUC

Length

10 nucleotides

Bulged bases

7KGB|1|a|U|1249, 7KGB|1|a|A|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7KGB_173 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.2166

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7KGB|1|a|G|1247
7KGB|1|a|C|1248
7KGB|1|a|U|1249
7KGB|1|a|G|1250
*
7KGB|1|a|C|1269
7KGB|1|a|G|1270
7KGB|1|a|A|1271
7KGB|1|a|A|1272
7KGB|1|a|U|1273
7KGB|1|a|C|1274

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14 type Z