IL_7KWG_059

3D structure

PDB id

7KWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7KWG_059 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.2764

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7KWG|1|a|C|1418
7KWG|1|a|A|1419
7KWG|1|a|C|1420
*
7KWG|1|a|G|1503
7KWG|1|a|A|1504
7KWG|1|a|A|1505
7KWG|1|a|G|1506

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

mRNA

Chain l

30S ribosomal protein S12