IL_7KWG_061

3D structure

PDB id

7KWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7KWG_061 not in the Motif Atlas

Homologous match to IL_4LFB_060

Geometric discrepancy: 0.208

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

7KWG|1|a|A|1427
7KWG|1|a|G|1428
7KWG|1|a|A|1429
7KWG|1|a|G|1430
*
7KWG|1|a|U|1493
7KWG|1|a|G|1494
7KWG|1|a|A|1495
7KWG|1|a|U|1496

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12