IL_7L08_053

3D structure

PDB id

7L08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome-RRFmt complex.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CCCUGUAC*GGACAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7L08_053 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.3048

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7L08|1|A|C|3119
7L08|1|A|C|3120
7L08|1|A|C|3121
7L08|1|A|U|3122
7L08|1|A|G|3123
7L08|1|A|U|3124
7L08|1|A|A|3125
7L08|1|A|C|3126
*
7L08|1|A|G|3131
7L08|1|A|G|3132
7L08|1|A|A|3133
7L08|1|A|C|3134
7L08|1|A|A|3135
7L08|1|A|A|3136
7L08|1|A|G|3137

Current chains

Chain A

16S RRNA

Nearby chains

Chain L

39S ribosomal protein L14, mitochondrial