IL_7LH5_033

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_033 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.081

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7LH5|1|AA|G|887
7LH5|1|AA|G|888
7LH5|1|AA|A|889
7LH5|1|AA|G|890
7LH5|1|AA|U|891
7LH5|1|AA|A|892
7LH5|1|AA|C|893
7LH5|1|AA|G|894
*
7LH5|1|AA|U|905
7LH5|1|AA|G|906
7LH5|1|AA|A|907
7LH5|1|AA|A|908
7LH5|1|AA|A|909
7LH5|1|AA|C|910

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12