IL_7LH5_172

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

7LH5|1|CA|U|244, 7LH5|1|CA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_172 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.1009

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

7LH5|1|CA|C|242
7LH5|1|CA|A|243
7LH5|1|CA|U|244
7LH5|1|CA|C|245
7LH5|1|CA|A|246
7LH5|1|CA|G|247
*
7LH5|1|CA|C|277
7LH5|1|CA|G|278
7LH5|1|CA|A|279
7LH5|1|CA|C|280
7LH5|1|CA|G|281
7LH5|1|CA|A|282
7LH5|1|CA|C|283
7LH5|1|CA|G|284

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CQ

30S ribosomal protein S17