IL_7LH5_286

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

7LH5|1|DA|A|1938, 7LH5|1|DA|U|1944, 7LH5|1|DA|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_286 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.127

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

7LH5|1|DA|C|1934
7LH5|1|DA|G|1935
7LH5|1|DA|A|1936
7LH5|1|DA|A|1937
7LH5|1|DA|A|1938
7LH5|1|DA|U|1939
7LH5|1|DA|U|1940
7LH5|1|DA|C|1941
7LH5|1|DA|C|1942
7LH5|1|DA|U|1943
7LH5|1|DA|U|1944
7LH5|1|DA|G|1945
*
7LH5|1|DA|C|1961
7LH5|1|DA|C|1962
7LH5|1|DA|U|1963
7LH5|1|DA|G|1964

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DD

50S ribosomal protein L2