IL_7LS1_028

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCGUC*GCC

Length

8 nucleotides

Bulged bases

7LS1|1|A2|C|482, 7LS1|1|A2|G|483, 7LS1|1|A2|U|485

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_028 not in the Motif Atlas

Geometric match to IL_5Z1I_002

Geometric discrepancy: 0.2873

The information below is about IL_5Z1I_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7LS1|1|A2|G|481
7LS1|1|A2|C|482
7LS1|1|A2|G|483
7LS1|1|A2|U|485
7LS1|1|A2|C|486
*
7LS1|1|A2|G|678
7LS1|1|A2|C|679
7LS1|1|A2|C|680

Current chains

Chain A2

28S rRNA

Nearby chains

Chain k2

60S ribosomal protein L28