IL_7LS1_067

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

G(OMG)G*UAAUC

Length

8 nucleotides

Bulged bases

7LS1|1|A2|A|1450, 7LS1|1|A2|A|1451

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_067 not in the Motif Atlas

Geometric match to IL_5TBW_033

Geometric discrepancy: 0.0902

The information below is about IL_5TBW_033

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

7LS1|1|A2|G|1437
7LS1|1|A2|OMG|1438
7LS1|1|A2|G|1439
*
7LS1|1|A2|U|1449
7LS1|1|A2|A|1450
7LS1|1|A2|A|1451
7LS1|1|A2|U|1452
7LS1|1|A2|C|1453

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

60S ribosomal protein L8

Chain H1

60S ribosomal protein L15

Chain J2

60S ribosomal protein L17

Chain d2

60S ribosomal protein L37