IL_7LS1_125

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

7LS1|1|A2|A|3319, 7LS1|1|A2|U|3335, 7LS1|1|A2|C|3339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_125 not in the Motif Atlas

Homologous match to IL_8C3A_088

Geometric discrepancy: 0.1031

The information below is about IL_8C3A_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7LS1|1|A2|C|3316
7LS1|1|A2|G|3317
7LS1|1|A2|A|3318
7LS1|1|A2|A|3319
7LS1|1|A2|G|3320
7LS1|1|A2|G|3321
*
7LS1|1|A2|U|3333
7LS1|1|A2|G|3334
7LS1|1|A2|U|3335
7LS1|1|A2|U|3336
7LS1|1|A2|G|3337
7LS1|1|A2|A|3338
7LS1|1|A2|C|3339
7LS1|1|A2|G|3340

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

60S ribosomal protein L8

Chain j2

60S ribosomal protein L37a

Chain m2

Small subunit ribosomal RNA; SSU rRNA